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Профиль

Alexis Verger 🧬🧫🧪

Профиль Vively

Molecular & structural biologist CNRS with a big respect for Transcription Factors, RNA Pol II & Mediator #CryoEM #ESR Advocating for #basicresearch #womeninSTEM #preprint Message in English or French. https://bsi-lille.cnrs.fr

⟳ Репост от Alexis Verger 🧬🧫🧪

We are looking for a lab manager starting from January 2027, you can find more information on our members page pacesalab.com#members. We are also starting to look into hosting master students starting 2027.

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⟳ Репост от Alexis Verger 🧬🧫🧪

ICYMI: New Online! Regulation of RNA transcript elongation in metazoans and its relevance to disease

Regulation of RNA transcript elongation in metazoans and its relevance to diseaseNature Reviews Molecular Cell Biology, Published online: 30 July 2026; doi:10.1038/s41580-026-01003-wThis Review discusses how transcript elongation by RNA polymerase II is regulated and how obstacles such as nucleosomes are overcome. Also discussed are the roles of transcription surveillance machineries, which ensure mRNA integrity and suppress spurious transcription, and how elongation defects contribute to diseases.dlvr.it
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⟳ Репост от Alexis Verger 🧬🧫🧪

We are excited to share two preprints reporting a mosquito-specific receptor for chikungunya virus and other alphaviruses! 🤩 www.biorxiv.org/content/10.6... www.biorxiv.org/content/10.6... @harvardmicro.bsky.social @harvardvirology.bsky.social @hhmi-science.bsky.social

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⟳ Репост от Alexis Verger 🧬🧫🧪

Bordeaux, France, has now recorded more days above 40°C in 2026 alone than during the entire 105-year period from 1920 (when observations began) to 2025. This is deeply shocking.

803,6 тыс.2,1 тыс.
⟳ Репост от Alexis Verger 🧬🧫🧪

New @talusbio.bsky.social #AI preprint just dropped 🚀 Meet Ptarmigan-1. It predicts which small molecules bind a protein, and which residues they hit, from sequence and 2D chemistry alone. No structures, no docking, no poses. www.biorxiv.org/content/10.6... Time for a 🧵 (1/13)

Structure-free, site-resolved contrastive learning extends small-molecule discovery beyond the reach of structure-based modelingVirtual screening asks which molecules, among an enormous space of drug-like chemistry, are worth synthesizing and testing against a protein target. Most modern methods answer by building and scoring ...www.biorxiv.org
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⟳ Репост от Alexis Verger 🧬🧫🧪

Now out as a perspective in PLOS Biology. Where next for structural bioinformatics? journals.plos.org/plosbiology/...

Where next for structural bioinformatics?Structural bioinformatics aims to answer biological questions by considering biomolecular structures at scale. This Perspective argues that now that we have accurate predictions, we need to ask what w...journals.plos.orgJoe Greener

I wrote a blog post about the future of structural bioinformatics. Where to go after AlphaFold? How do we avoid the field becoming a load of half-baked LLMs? Let me know what you think. jgreener64.github.io/posts/struct...

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⟳ Репост от Alexis Verger 🧬🧫🧪

New work from the Gygi and Cantley labs @harvardcellbio.bsky.social provides a unique structure-based protein kinase specificity atlas across the human proteome. An exciting resource for biological discovery! www.nature.com/articles/s41...

An AI-enabled structural atlas decodes kinase specificity across the human proteome - Nature BiotechnologyPhosphorylation potential and kinase specificity are assigned for the entire human proteome.www.nature.com
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⟳ Репост от Alexis Verger 🧬🧫🧪

Huge congrats to the many authors who over MANY years worked on this (but especially @karaehunt.bsky.social , @trevorbrandt.bsky.social, Karina, @shaharsu.bsky.social and @remenecker.bsky.social. www.nature.com/articles/s41...

Rational design of disordered proteins for sequence–function investigation - NatureGOOSE enables the design and testing of thousands of disordered protein region sequences to reveal distinct sequence-to-function relationships.www.nature.comAlex Holehouse

New (well, very old, but 100% updated) preprint: Rational design of disordered proteins for systematic sequence-to-function investigation Work done in collaboration with @shaharsu.bsky.social lab - check out the three (3) threads from the folks who did the work!

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⟳ Репост от Alexis Verger 🧬🧫🧪

Latest preprint on AlphaFold potential and limitations. We look in particular at the addition of ions to models.

bioRxiv Biophysics

Deep-learning predictions of biomolecular structures : persistent limitations and new horizons extended by explicit ion addition https://www.biorxiv.org/content/10.64898/2026.07.24.740587v1

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⟳ Репост от Alexis Verger 🧬🧫🧪

À pourvoir, la fonction de président de @inserm.fr (Institut national de la santé et de la recherche médicale) vacante à compter du 31 janvier 2027. Candidatures attendues pour le 30 septembre 2026. #ESR

www.legifrance.gouv.fr
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⟳ Репост от Alexis Verger 🧬🧫🧪

Come work on exciting AI for biology projects in Paris!! 🇫🇷 Details and application below, deadline sept 1st!

Antigen Evolution & Design Lab

🚨 JOB ALERT🚨 We are very excited to be hiring the lab's ✨very first postdoc✨! Work on new AI technologies for decoding antigen protein evolution in a fresh research environment, at the heart of Paris 🇫🇷 Details & link to apply: research.pasteur.fr/en/job/postd... Deadline: Sep 1st

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