journals.asm.org/doi/10.1128/... comprehensive review of bacterial RNA modifications 🦠
Профиль
Zeynep Baharoglu
Профиль VivelyRNA modifications, antibiotic tolerance, bacterial stress, non coding RNAs, Vibrio cholerae. EPICS lab - Institut Pasteur & EGM (IBPC, CNRS)
Multi-omics analysis identifies a role for Streptococcus suis MnmE in growth regulation and environmental adaptation 🦠 journals.asm.org/doi/10.1128/...
AUA codon decoding by preferential use of tRNAIle(UAU) in Lactobacillus casei rnajournal.cshlp.org/content/earl... S4U modif impacts aminoacylation of specific ile isodecoder, t6A impacts recognition 🦠
journals.plos.org/plosbiology/... #RNAsky
QutRNA2: robust tRNA modification discovery from Nanopore direct tRNA sequencing 💫💫https://academic.oup.com/nargab/article/8/3/lqag065/8725956?login=false
Widespread immune systems protect bacteria against conjugative plasmids 🦠 www.biorxiv.org/content/10.6...
16S ribosomal RNA modification drives transcript-specific translation efficiency #RNAsky 🦠 RsmH in B. subtilis www.biorxiv.org/content/10.6...
Functional divergence and conservation in the QueC protein family (PF06508): from tRNA modification to anti-phage defense 🦠 portlandpress.com/biochemj/art...
Functional divergence and conservation in the QueC protein family (PF06508): from tRNA modification to anti-phage defenseAbstract. The QueC protein family (PF06508) is best known for its role in the biosynthesis of 7-deazaguanine derivatives, including the tRNA modification queuosine and the DNA base 7-cyano-7-deazaguan...portlandpress.comDefective queuosine and i6A/ms2i6A modification of tRNATyr cause frameshifting and protein aggregation #RNAsky in 🦠E. coli and S. pombe academic.oup.com/nar/article/...
rRNA modification circuit, with interdependence of modifs by rsmF, RsmH (RsmI?), RsmE in E. coli 🦠 www.biorxiv.org/content/10.6... 💫 #rnasky
Studying the regulons of OmrA and OmrB paralogous small RNAs reveals targets involved in central carbon metabolism and lipogenesis 🦠 www.biorxiv.org/content/10.6... 💫 @egmresearch.bsky.social
Conservation and evolution of the ribosome across the photosynthetic lineage🦠🍓''gain and loss of ribosomal proteins, rRNA modifications and hibernation factors upon endosymbiosis'' www.biorxiv.org/content/10.6...
A detailed molecular picture of protein folding during active translation www.biorxiv.org/content/10.6...
☀️🔥 New RNA-modification newsletter, heat-wave edition: wobble mods, QueC evolution, tRNA thiolation, host signals rewiring virulence translation, bacterial mRNA fate, and a bonus chapter on ribosome heterogeneity, hibernation & dormancy. 🦠 Stay cool, modify your RNAs.
Increased temperature selects for antibiotic resistance genes in a model aquatic ecosystem #AMR 🦠 www.nature.com/articles/s44...
Increased temperature selects for antibiotic resistance genes in a model aquatic ecosystem - npj Antimicrobials and Resistancenpj Antimicrobials and Resistance - Increased temperature selects for antibiotic resistance genes in a model aquatic ecosystemwww.nature.comAMaNITA: an end-to-end workflow for native tRNA nanopore sequencing data analysis www.biorxiv.org/content/10.6...
ModkitOpt: An optimised workflow for RNA modification stoichiometry estimation and site calling from nanopore sequencing www.biorxiv.org/content/10.6...
Conformational diversity of collided ribosomes determines stress signaling www.biorxiv.org/content/10.6...
A variant rRNA serves as a translational repressor in Plasmodium falciparum www.biorxiv.org/content/10.6...
Mapping biological and chemical dimensions of antimicrobial resistance pollution and exposures due to treated wastewater discharges into US surface waters at the national scale #AMR 🦠 www.sciencedirect.com/science/arti...
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