Профиль

Join my group at @fz_juelich within the @ceplas.bsky.social excellence cluster. #PlantJobs We’re looking for a postdoc/senior scientist in plant single-cell and spatial transcriptomics recruiting.fz-juelich.de/jobposting/8...

Postdoctoral Researcher / Senior Scientist in the field of plant single-cell and spatial transcriptomicsrecruiting.fz-juelich.de

Within the @trr341.bsky.social JJ Szymanski has an interesting postdoc position for leading plant Ecological genetics AI recruiting.fz-juelich.de/jobposting/5...

Postdoctoral Researcher - Machine Learning for Plant Regulatory Genomicsrecruiting.fz-juelich.de

Only 17% of 307 million publicly available sequences include geographical provenance.Yet benefit-sharing from digital sequence information depends on knowing where genetic resources came from.Can databases close this gap without making open data harder to submit&reuse? www.nature.com/articles/s41...

How can biological databases support the new UN mechanism for benefit-sharing from digital sequence information? - Scientific DataScientific Data - How can biological databases support the new UN mechanism for benefit-sharing from digital sequence information?www.nature.com

@sebastianbeier.bsky.social has fixed some minor issues in our read trimmer Trimmomatic for R0.41 since the latest release just a few months ago academic.oup.com/bioinformati.... github.com/usadellab/Tr.... Please note, that the website trimmomatic.com is not ours and send you to commercials.

Trimmomatic: a decade of feature-rich, high-performance NGS read preprocessingAbstractMotivation. Trimmomatic is a widely adopted tool for preprocessing high-throughput sequencing data, particularly from Illumina platforms. Since itsacademic.oup.com

1/ In 2014, we published the genome of the stress resilient wild tomato Solanum pennellii. It showed many new transposable elements – non randomly inserted. Now, a new chapter begins (and more is yet to come) with Willem Rengs and @charlieunderwood.bsky.social www.nature.com/articles/s41...

1/8 What if the genomic features we associate with fungal pathogens were also used by mutualists? We assembled 41 scale lichen genomes across 11 Peltigera species with 30 chromosome scale and 5 T2T revealing an unexpected genomic toolkit behind lichen symbiosis. doi.org/10.64898/202... #lichen

A chromosome-scale super-pangenome of the lichen genus Peltigera reveals genome architecture and expanded interaction repertoires shared across pathogenic and mutualistic fungiFungi engage in associations with other organisms across a continuum from pathogenic to mutualistic lifestyles. Hence, they require a compendium of molecular capacities, including partner recognition,...doi.org

Our @denbi.bsky.social NGS trimmer/preprocessor Trimmomatic has some additional speed ups using parallel (de)compression and some more developments upcoming. academic.oup.com/bioinformati... #NGS #bioinformatics #genomics

Trimmomatic: a decade of feature-rich, high-performance NGS read preprocessingAbstractMotivation. Trimmomatic is a widely adopted tool for preprocessing high-throughput sequencing data, particularly from Illumina platforms. Since itsacademic.oup.com

Galaxy is really smashing it -with their training material. Here for helixer gene finding.

True green computing:-)