minibwa v0.3 released with a few minor bug fixes and two missing bwa-mem features (XA tag for secondary hits and option -H to inject header lines). Also added the "mem" subcommand to mimic "bwa mem" CLI to some extent. github.com/lh3/minibwa/...
Release Minibwa-0.3 (r391) · lh3/minibwaNotable changes:
New feature: added the mem subcommand to mimic the bwa-mem command-line
interface (CLI). Most input/output options and commonly used options are
retained; unsupported or incompat...github.com